housekeepingMinerPy

housekeepingMinerPy is a Python library for mine housekeeping genes in RNA-seq experiments.

Requirements

• data manipulation packages:

  • numpy (version >= 1.26.4)

  • pandas (version >= 1.5.3)

  • anndata (version >= 0.10.5)

• stats and machine learning packages:

  • scipy (version >= 1.11.4)

  • scikit-network (version >= 0.31.0)

  • umap-learn (version >= 0.5.5)

  • scikit-learning (version >= 1.4.0)

  • hdbscan (version >= 0.8.36)

  • pygad (version >= 3.3.1)

  • boruta_py (version >= 0.3)

• plot packages:

  • matplotlib (version >= 3.8.3)

  • seaborn (version >= 0.11.2)

  • upsetplot (version >= 0.9.0)

  • statannotations (version >= 0.6.0)

  • adjusttext (version >= 1.0.4)

Installing

We recommend use pip to install the package

pip install housekeepingMinerPy

But you can also use the git clone and install via setup.py